usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): -33.8281428571429 13.9978928571429 29.5853928571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1693 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 518 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 518 Number of spheres polar: 196, nonpolar: 259, out of current total: 518 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -43.81687 -23.90108 4.00021 23.97940 19.60334 39.54962 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 160 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 131 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 63 Spheres center of coords (x y z): -33.7556031746032 14.1087874603175 29.4921382539683 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.63050472869935 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 28