usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): -33.8281428571429 13.9978928571429 29.5853928571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1693 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 518 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 518 Number of spheres polar: 196, nonpolar: 259, out of current total: 518 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -43.81687 -23.90108 4.00021 23.97940 19.60334 39.54962 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 284 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 221 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 111 Spheres center of coords (x y z): -33.6804466666667 14.1930562162162 29.747387027027 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.67863558770416 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 28