usefragsph not on There are 6 ligand heavy atoms Ligand center of coords (x y z): -14.2223333333333 -7.5065 40.5703333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 699 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 406 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 406 Number of spheres polar: 206, nonpolar: 166, out of current total: 406 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -24.17805 -4.24627 -17.46777 2.49269 32.02685 50.51952 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 201 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 162 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 114 Spheres center of coords (x y z): -9.02328710526316 -5.37053973684211 37.845841754386 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.70515278896894 Final number of output spheres is: 60 Number of polar spheres: 39 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 6