usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 35.4324666666667 31.5655333333333 -0.427066666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1155 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 511 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 511 Number of spheres polar: 227, nonpolar: 227, out of current total: 511 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.52050 44.57143 21.56917 41.55462 -10.39385 7.14050 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 225 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 175 Spheres center of coords (x y z): 35.6306185714286 33.5112816571429 -4.15774268571429 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.45227461424004 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 15