usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): -25.8909090909091 -17.4603636363636 -42.1848181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 808 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 444 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 444 Number of spheres polar: 211, nonpolar: 173, out of current total: 444 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -33.76495 -15.93573 -27.39672 -7.46966 -52.01986 -32.21618 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 136 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 104 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 79 Spheres center of coords (x y z): -25.999700886076 -15.3523778481013 -36.954522278481 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.93818072646522 Final number of output spheres is: 45 Number of polar spheres: 26 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 11