usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 10.7943 -10.463 40.3026 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 867 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 534 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 534 Number of spheres polar: 265, nonpolar: 165, out of current total: 534 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.81611 20.55646 -20.16522 -0.60114 30.44568 49.81728 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 196 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 138 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 111 Spheres center of coords (x y z): 5.10489747747748 -9.30264747747748 42.88047 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.65192165296077 Final number of output spheres is: 45 Number of polar spheres: 26 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 10