usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 36.1452142857143 31.9486428571429 0.963642857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1065 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 442 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 442 Number of spheres polar: 184, nonpolar: 191, out of current total: 442 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.14778 45.70074 21.96350 41.92772 -8.91988 10.93079 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 157 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 122 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 102 Spheres center of coords (x y z): 35.9992603921569 33.8019143137255 -3.21287156862745 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.3670593073897 Final number of output spheres is: 45 Number of polar spheres: 25 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 14