usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 76.7532307692308 26.8605384615385 41.5943076923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1195 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 718 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 718 Number of spheres polar: 367, nonpolar: 296, out of current total: 718 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 66.79217 86.74328 16.86925 36.81048 31.68433 51.36893 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 175 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 139 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 35 Final number of output spheres is: 35 Number of polar spheres: 25 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 13