usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): -10.0774666666667 10.5375333333333 7.0298 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1336 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1017 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1012 Number of spheres polar: 323, nonpolar: 487, out of current total: 1012 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.04903 -0.25834 1.82073 20.52074 -2.96517 16.57204 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 275 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 214 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 213 Spheres center of coords (x y z): -11.4168913615023 13.8398557276995 5.94226835680751 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.50261870458854 Final number of output spheres is: 45 Number of polar spheres: 26 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 15