usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 18.1099230769231 54.3846923076923 20.6400769230769 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1175 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 600 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 600 Number of spheres polar: 291, nonpolar: 267, out of current total: 600 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.11871 28.05867 44.42039 64.35729 10.83879 29.81786 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 148 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 107 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 35 Final number of output spheres is: 35 Number of polar spheres: 26 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 13