usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): -0.698444444444444 50.9696111111111 9.34916666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1193 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 842 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 842 Number of spheres polar: 229, nonpolar: 410, out of current total: 842 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.67362 9.14964 41.04277 60.92760 -0.10613 19.34024 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 297 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 247 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 243 Spheres center of coords (x y z): -4.6025438271605 50.1554528806584 8.7194325925926 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.82825262021082 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 18