usefragsph not on
There are 15 ligand heavy atoms
Ligand center of coords (x y z): 9.07406666666667 -29.2946666666667 16.0724
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1322
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 995
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 995
Number of spheres polar: 289, nonpolar: 513, out of current total: 995
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.71137 19.05568 -38.78076 -19.30385 6.26412 26.06030
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 497
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 421
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 413
Spheres center of coords (x y z): 9.72925290556901 -26.318309031477 17.5659787409201
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 8.22597944503821
Final number of output spheres is: 60
Number of polar spheres: 26
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 15