usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 60.6956666666667 31.1182916666667 42.1939166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1679 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1050 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1046 Number of spheres polar: 457, nonpolar: 451, out of current total: 1046 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 50.74006 68.17690 21.15033 40.98795 32.24329 51.47010 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 285 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 235 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 235 Spheres center of coords (x y z): 59.9424045531915 30.6915139574468 39.4001261276596 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.8088003258511 Final number of output spheres is: 45 Number of polar spheres: 28 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 24