usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 77.3582777777778 27.2153888888889 41.1435555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1216 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 655 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 655 Number of spheres polar: 305, nonpolar: 306, out of current total: 655 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 67.37328 87.32508 17.22862 37.13363 31.34362 51.09097 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 323 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 270 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 62 Spheres center of coords (x y z): 77.9588482258064 27.2755170967742 40.3290037096774 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.65721341713584 Final number of output spheres is: 60 Number of polar spheres: 38 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 18