usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 76.9586666666667 26.97 41.0919333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 948 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 615 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 615 Number of spheres polar: 310, nonpolar: 266, out of current total: 615 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 67.01809 86.94838 16.97945 36.95757 31.23876 51.05883 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 155 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 125 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 34 Final number of output spheres is: 34 Number of polar spheres: 25 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 15