usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 32.0964615384615 54.0486923076923 3.67538461538462 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 832 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 540 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 540 Number of spheres polar: 258, nonpolar: 233, out of current total: 540 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.46507 42.07112 44.11018 63.99726 -4.62736 13.64101 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 225 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 196 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 56 Final number of output spheres is: 56 Number of polar spheres: 30 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 13