usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 77.0666923076923 25.9376923076923 42.2266153846154 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 971 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 626 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 626 Number of spheres polar: 315, nonpolar: 282, out of current total: 626 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 67.07126 87.02946 15.98300 35.88155 32.37276 52.18954 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 180 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 140 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 23 Final number of output spheres is: 23 Number of polar spheres: 16 Number of nonpolar spheres: 6 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 13