usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): 74.2245833333333 46.6266666666667 42.7061666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 920 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 463 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 463 Number of spheres polar: 253, nonpolar: 186, out of current total: 463 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 64.23784 84.17267 37.63125 55.92600 32.70670 52.66289 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 135 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 100 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 30 Final number of output spheres is: 30 Number of polar spheres: 22 Number of nonpolar spheres: 7 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 12