usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 15.8437333333333 1.5498 15.555 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1137 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 801 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 801 Number of spheres polar: 354, nonpolar: 370, out of current total: 801 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.88637 25.81800 -8.40275 11.54703 5.56816 25.35739 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 207 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 163 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 34 Final number of output spheres is: 34 Number of polar spheres: 19 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 15