usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 15.743 1.32435714285714 15.7779285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1148 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 727 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 727 Number of spheres polar: 326, nonpolar: 343, out of current total: 727 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.83975 25.72693 -8.67008 11.29593 5.81164 25.44214 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 354 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 289 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 68 Spheres center of coords (x y z): 16.5884492647059 1.56340191176471 14.3992494117647 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.89400703671875 Final number of output spheres is: 60 Number of polar spheres: 34 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 14