usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 77.4870666666666 26.4552 42.3526 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1180 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 759 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 759 Number of spheres polar: 316, nonpolar: 396, out of current total: 759 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 67.48867 87.48068 16.53515 36.44653 33.00721 52.33696 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 356 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 303 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 57 Final number of output spheres is: 57 Number of polar spheres: 29 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 15