usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 77.1895384615385 26.9731538461538 41.7397692307692 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1061 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 669 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 669 Number of spheres polar: 338, nonpolar: 288, out of current total: 669 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 67.28811 87.18546 16.97994 36.84339 31.80678 51.64845 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 178 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 143 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 33 Final number of output spheres is: 33 Number of polar spheres: 24 Number of nonpolar spheres: 8 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 13