usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 77.3179333333333 26.4686666666667 42.2162666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1162 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 790 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 790 Number of spheres polar: 341, nonpolar: 401, out of current total: 790 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 67.32656 87.28635 16.48119 36.45708 32.30536 52.09626 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 391 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 322 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 58 Final number of output spheres is: 58 Number of polar spheres: 31 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 15