usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 7.73980952380952 30.5777142857143 -1.24714285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1341 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 811 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 811 Number of spheres polar: 210, nonpolar: 367, out of current total: 811 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.25967 17.72532 20.58966 40.57176 -11.02611 8.46741 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 480 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 426 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 412 Spheres center of coords (x y z): 7.52224242718446 27.1722916262136 -2.10718919902913 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.11511290954614 Final number of output spheres is: 60 Number of polar spheres: 32 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 21