usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 48.814625 14.4024375 23.995 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1072 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 572 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 572 Number of spheres polar: 302, nonpolar: 228, out of current total: 572 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 38.81727 58.78357 4.50469 24.40085 14.03666 33.93352 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 254 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 209 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 74 Spheres center of coords (x y z): 48.4865804054054 14.9472233783784 22.8270336486487 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.71925890187392 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 16