usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 30.5111875 6.0546875 20.7293125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1233 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 590 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 590 Number of spheres polar: 293, nonpolar: 274, out of current total: 590 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.85288 40.37908 -3.94189 16.04195 11.08702 30.59770 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 159 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 111 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 37 Final number of output spheres is: 37 Number of polar spheres: 27 Number of nonpolar spheres: 10 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 16