usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 30.5111875 6.0546875 20.7293125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1233 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 590 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 590 Number of spheres polar: 293, nonpolar: 274, out of current total: 590 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.85288 40.37908 -3.94189 16.04195 11.08702 30.59770 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 256 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 211 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 77 Spheres center of coords (x y z): 30.5812207792208 5.51565623376623 21.8714050649351 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.92601174076581 Final number of output spheres is: 60 Number of polar spheres: 32 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 16