usefragsph not on
There are 15 ligand heavy atoms
Ligand center of coords (x y z): 15.6523333333333 2.16793333333333 15.6094
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1383
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 879
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 879
Number of spheres polar: 314, nonpolar: 461, out of current total: 879
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.81177 25.64511 -7.81634 12.16415 6.44498 25.47792
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 258
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 203
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 201
Spheres center of coords (x y z): 18.7594040298508 1.59577865671642 17.3491935323383
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 8.06636838047734
Final number of output spheres is: 45
Number of polar spheres: 30
Number of nonpolar spheres: 12
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 15