usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 15.566 1.37753846153846 15.8329230769231 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 876 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 625 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 625 Number of spheres polar: 338, nonpolar: 239, out of current total: 625 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.70511 25.56111 -8.51060 11.30786 6.14803 25.74285 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 175 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 127 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 68 Spheres center of coords (x y z): 19.2946423529412 5.36728264705882 14.7133722058824 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.19091574362958 Final number of output spheres is: 45 Number of polar spheres: 31 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 13