usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 76.8280769230769 27.0271538461539 41.404 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1130 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 732 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 732 Number of spheres polar: 365, nonpolar: 299, out of current total: 732 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 66.84200 86.77372 17.05004 37.02553 31.45615 50.81040 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 208 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 140 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 34 Final number of output spheres is: 34 Number of polar spheres: 21 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 13