usefragsph not on
There are 13 ligand heavy atoms
Ligand center of coords (x y z): 76.8280769230769 27.0271538461539 41.404
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1130
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 732
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 732
Number of spheres polar: 365, nonpolar: 299, out of current total: 732
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 66.84200 86.77372 17.05004 37.02553 31.45615 50.81040
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 312
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 266
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 75
Spheres center of coords (x y z): 77.6607696 26.7394374666667 40.8351802666667
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.03297029547022
Final number of output spheres is: 60
Number of polar spheres: 33
Number of nonpolar spheres: 25
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 13