usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 8.14746153846154 -11.9426153846154 24.8503846153846 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1036 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 506 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 504 Number of spheres polar: 295, nonpolar: 182, out of current total: 504 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.82956 18.12646 -21.90297 -1.98471 16.15937 32.73865 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 244 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 189 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 77 Spheres center of coords (x y z): 7.78988818181818 -13.0082137662338 25.5346535064935 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.16447814848352 Final number of output spheres is: 60 Number of polar spheres: 38 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 13