usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 8.75761538461538 26.8035384615385 20.7081538461538 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1113 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 560 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 560 Number of spheres polar: 298, nonpolar: 236, out of current total: 560 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.21992 18.67664 16.80989 36.78456 10.86111 29.66713 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 244 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 197 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 74 Spheres center of coords (x y z): 7.74964648648649 27.2351660810811 21.4321813513514 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.07441859569945 Final number of output spheres is: 60 Number of polar spheres: 36 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 13