usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 21.9412352941176 13.8040588235294 23.3251764705882 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1366 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 866 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 866 Number of spheres polar: 353, nonpolar: 434, out of current total: 866 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.94185 31.91164 3.95723 23.77445 13.39730 33.20329 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 398 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 336 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 322 Spheres center of coords (x y z): 21.8957559627329 17.3706975776397 25.3631952795031 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.07056910808174 Final number of output spheres is: 60 Number of polar spheres: 46 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 17