usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 20.6680588235294 13.0228823529412 58.0087647058824 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1152 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 750 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 750 Number of spheres polar: 291, nonpolar: 406, out of current total: 750 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.70125 30.66728 3.02873 22.86453 48.02269 68.00339 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 206 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 168 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 35 Final number of output spheres is: 35 Number of polar spheres: 27 Number of nonpolar spheres: 8 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 17