usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 14.7204666666667 7.24873333333333 24.2739333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1184 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 828 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 828 Number of spheres polar: 325, nonpolar: 387, out of current total: 828 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.85122 24.69216 -2.74862 17.22481 14.59664 34.26828 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 387 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 331 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 327 Spheres center of coords (x y z): 17.7826342813456 8.15093006116208 25.4497701834863 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.26978604655315 Final number of output spheres is: 60 Number of polar spheres: 36 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 15