usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): -0.6853125 38.1031875 15.9344375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1313 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 817 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 817 Number of spheres polar: 269, nonpolar: 467, out of current total: 817 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.68296 9.18080 28.25714 48.04560 5.94794 25.89833 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 397 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 336 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 78 Spheres center of coords (x y z): -0.78549358974359 37.015666025641 16.5880011538462 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.87925047952994 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 16