usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 20.5092 62.2687333333333 28.5374 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1238 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 783 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 783 Number of spheres polar: 376, nonpolar: 351, out of current total: 783 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.73277 29.30387 52.33086 72.15656 18.58691 38.52102 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 211 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 157 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 34 Final number of output spheres is: 34 Number of polar spheres: 24 Number of nonpolar spheres: 10 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 15