usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 0.8465 71.5846 79.0647 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 774 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 473 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 473 Number of spheres polar: 236, nonpolar: 186, out of current total: 473 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.97679 10.78568 61.64285 81.56379 69.11240 89.02623 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 215 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 181 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 51 Final number of output spheres is: 51 Number of polar spheres: 31 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 10