usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 31.7353 47.2375 82.5065 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 767 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 439 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 439 Number of spheres polar: 196, nonpolar: 214, out of current total: 439 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.00055 41.73004 37.83700 56.36400 72.55190 92.49186 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 127 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 98 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 26 Final number of output spheres is: 26 Number of polar spheres: 18 Number of nonpolar spheres: 8 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 10