usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 8.55441666666667 25.8455 21.9528333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1360 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 558 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 558 Number of spheres polar: 258, nonpolar: 249, out of current total: 558 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.41674 18.49689 15.88835 35.83783 12.02077 31.77886 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 164 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 130 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 44 Final number of output spheres is: 44 Number of polar spheres: 27 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 24