usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 77.2418 25.8935 43.1907 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1025 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 729 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 729 Number of spheres polar: 356, nonpolar: 321, out of current total: 729 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 67.30651 87.20677 15.95880 35.80800 34.01157 52.61880 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 335 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 281 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 64 Spheres center of coords (x y z): 77.9552434375 26.37393203125 41.39718453125 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.29620867368921 Final number of output spheres is: 60 Number of polar spheres: 35 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 10