usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): -24.1424 -19.6397 22.656 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 748 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 513 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 513 Number of spheres polar: 213, nonpolar: 256, out of current total: 513 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -34.05813 -14.22455 -29.23082 -10.45550 12.67980 32.65080 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 243 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 200 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 42 Final number of output spheres is: 42 Number of polar spheres: 30 Number of nonpolar spheres: 10 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 10