usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 24.3612307692308 -18.9013846153846 -22.5090769230769 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 952 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 646 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 646 Number of spheres polar: 290, nonpolar: 304, out of current total: 646 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.41498 34.35900 -28.68106 -9.14480 -32.33879 -12.52932 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 292 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 251 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 54 Final number of output spheres is: 54 Number of polar spheres: 29 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 13