usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): -30.2131176470588 14.4710588235294 -39.1787058823529 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1347 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 896 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 896 Number of spheres polar: 277, nonpolar: 484, out of current total: 896 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -40.19273 -20.29942 4.72724 24.45743 -47.44756 -29.18959 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 445 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 388 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 376 Spheres center of coords (x y z): -32.3744068882979 13.8980395212766 -35.7173949468085 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.67296248521274 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 17