usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 79.1578214285714 16.6293214285714 28.76575
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2017
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1053
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1053
Number of spheres polar: 469, nonpolar: 455, out of current total: 1053
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 69.24609 89.10640 6.80048 26.58287 18.76655 32.83449
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 287
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 226
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 223
Spheres center of coords (x y z): 78.9315707623318 16.4597159192825 25.0392389237668
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.93741990210536
Final number of output spheres is: 45
Number of polar spheres: 13
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 28