usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): -10.9985 26.3150833333333 42.1330833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 946 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 628 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 628 Number of spheres polar: 294, nonpolar: 285, out of current total: 628 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.96222 -1.09213 16.39589 36.27160 32.17060 51.67699 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 169 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 131 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 29 Final number of output spheres is: 29 Number of polar spheres: 19 Number of nonpolar spheres: 6 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 12