usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): -30.99825 -5.32325 42.6951666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 996 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 570 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 570 Number of spheres polar: 308, nonpolar: 209, out of current total: 570 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -40.91712 -21.02009 -14.21320 4.39876 32.69712 52.67700 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 151 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 112 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 28 Final number of output spheres is: 28 Number of polar spheres: 20 Number of nonpolar spheres: 6 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 12