usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): -0.7793125 -4.6975625 57.8164375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1018 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 747 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 747 Number of spheres polar: 232, nonpolar: 342, out of current total: 747 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.76588 9.21180 -14.43116 5.23037 47.95233 67.72553 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 420 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 372 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 361 Spheres center of coords (x y z): 2.95818149584488 -3.61824858725762 57.5869013850415 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.44455154543205 Final number of output spheres is: 60 Number of polar spheres: 39 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 16