usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): -20.0044 -25.791 19.2932 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 882 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 617 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 617 Number of spheres polar: 307, nonpolar: 269, out of current total: 617 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -29.94483 -10.05090 -35.68658 -15.90442 10.51208 29.14067 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 169 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 134 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 27 Final number of output spheres is: 27 Number of polar spheres: 20 Number of nonpolar spheres: 4 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 10